PATTERSON, MURRAY DAN
PATTERSON, MURRAY DAN
DIPARTIMENTO DI INFORMATICA, SISTEMISTICA E COMUNICAZIONE
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data
2023 Chourasia, P; Ali, S; Ciccolella, S; Della Vedova, G; Patterson, M
Effective Clustering for Single Cell Sequencing Cancer Data
2021 Ciccolella, S; Patterson, M; Bonizzoni, P; Della Vedova, G
Inferring Cancer Progression from Single-Cell Sequencing while Allowing Mutation Losses
2021 Ciccolella, S; Ricketts, C; Soto Gomez, M; Patterson, M; Silverbush, D; Bonizzoni, P; Hajirasouliha, I; Della Vedova, G
gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data
2020 Ciccolella, S; Soto Gomez, M; Patterson, M; Della Vedova, G; Hajirasouliha, I; Bonizzoni, P
A rearrangement distance for fully-labelled trees
2019 Bernardini, G; Bonizzoni, P; Della Vedova, G; Patterson, M
Effective clustering for single cell sequencing cancer data
2019 Ciccolella, S; Patterson, M; Bonizzoni, P; Della Vedova, G
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era
2019 Rizzi, R; Beretta, S; Patterson, M; Pirola, Y; Previtali, M; Della Vedova, G; Bonizzoni, P
GPPS: an ILP-based approach for inferring cancer progression with mutation losses from single cell data
2018 Ciccolella, S; Gomez, M; Patterson, M; Vedova, G; Hajirasouliha, I; Bonizzoni, P
HapCHAT: Adaptive haplotype assembly for efficiently leveraging high coverage in long reads
2018 Beretta, S; Patterson, M; Zaccaria, S; Della Vedova, G; Bonizzoni, P
Character-based phylogeny construction and its application to tumor evolution
2017 Della Vedova, G; Patterson, M; Rizzi, R; Soto, M
DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies
2017 Duchemin, W; Anselmetti, Y; Patterson, M; Ponty, Y; Bérard, S; Chauve, C; Scornavacca, C; Daubin, V; Tannier, E
PWHATSHAP: Efficient haplotyping for future generation sequencing
2016 Bracciali, A; Aldinucci, M; Patterson, M; Marschall, T; Pisanti, N; Merelli, I; Torquati, M
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads
2015 Patterson, M; Marschall, T; Pisanti, N; Iersel, L; Stougie, L; Klau, G; Schonhuth, A
Lateral Gene Transfer, Rearrangement, Reconciliation
2013 Patterson, M; Szöllősi, G; Daubin, V; Tannier, E
Mapping proteins in the presence of paralogs using units of coevolution
2013 El-Kebir, M; Marschall, T; Wohlers, I; Patterson, M; Heringa, J; Schönhuth, A; Klau, G
Hardness results on the gapped consecutive-ones property problem
2012 Mauch, J; Patterson, M; Chauve, C
Linearization of ancestral multichromosomal genomes
2012 Maňuch, J; Patterson, M; Wittler, R; Chauve, C; Tannier, E
Complexity of finding non-planar rectilinear drawings of graphs
2011 Maňuch, J; Patterson, M; Poon, S; Thachuk, C
Consistency of sequence-based gene clusters
2011 Wittler, R; Maňuch, J; Patterson, M; Stoye, J
The complexity of the gapped consecutive-ones property problem for matrices of bounded maximum degree
2011 Maňuch, J; Patterson, M