ZACCARIA, SIMONE
ZACCARIA, SIMONE
DIPARTIMENTO DI INFORMATICA, SISTEMISTICA E COMUNICAZIONE
CONIPHER: a computational framework for scalable phylogenetic reconstruction with error correction
2024 Grigoriadis, K; Huebner, A; Bunkum, A; Colliver, E; Frankell, A; Hill, M; Thol, K; Birkbak, N; Swanton, C; Zaccaria, S; Mcgranahan, N
HATCHet2: clone- and haplotype-specific copy number inference from bulk tumor sequencing data
2024 Myers, M; Arnold, B; Bansal, V; Balaban, M; Mullen, K; Zaccaria, S; Raphael, B
Mixed responses to targeted therapy driven by chromosomal instability through p53 dysfunction and genome doubling
2024 Hobor, S; Al Bakir, M; Hiley, C; Skrzypski, M; Frankell, A; Bakker, B; Watkins, T; Markovets, A; Dry, J; Brown, A; van der Aart, J; van den Bos, H; Spierings, D; Oukrif, D; Novelli, M; Chakrabarti, T; Rabinowitz, A; Ait Hassou, L; Litiere, S; Kerr, D; Tan, L; Kelly, G; Moore, D; Renshaw, M; Venkatesan, S; Hill, W; Huebner, A; Martinez-Ruiz, C; Black, J; Wu, W; Angelova, M; Mcgranahan, N; Downward, J; Chmielecki, J; Barrett, C; Litchfield, K; Chew, S; Blakely, C; de Bruin, E; Foijer, F; Vousden, K; Bivona, T; Lester, J; Bajaj, A; Nakas, A; Sodha-Ramdeen, A; Tufail, M; Scotland, M; Boyles, R; Rathinam, S; Wilson, C; Marrone, D; Dulloo, S; Fennell, D; Matharu, G; Shaw, J; Boleti, E; Cheyne, H; Khalil, M; Richardson, S; Cruickshank, T; Price, G; Kerr, K; Benafif, S; French, J; Gilbert, K; Naidu, B; Patel, A; Osman, A; Enstone, C; Langman, G; Shackleford, H; Djearaman, M; Kadiri, S; Middleton, G; Leek, A; Hodgkinson, J; Totton, N; Montero, A; Smith, E; Fontaine, E; Granato, F; Paiva-Correia, A; Novasio, J; Rammohan, K; Joseph, L; Bishop, P; Shah, R; Moss, S; Joshi, V; Crosbie, P; Brown, K; Carter, M; Chaturvedi, A; Oliveira, P; Lindsay, C; Blackhall, F; Krebs, M; Summers, Y; Clipson, A; Tugwood, J; Kerr, A; Rothwell, D; Dive, C; Aerts, H; Schwarz, R; Kaufmann, T; Wilson, G; Rosenthal, R; Van Loo, P; Birkbak, N; Szallasi, Z; Kisistok, J; Sokac, M; Salgado, R; Diossy, M; Demeulemeester, J; Bunkum, A; Dwornik, A; Magness, A; Rowan, A; Karamani, A; Toncheva, A; Chain, B; Castignani, C; Bailey, C; Abbosh, C; Puttick, C; Weeden, C; Lee, C; Richard, C; Naceur-Lombardelli, C; Pearce, D; Karagianni, D; Biswas, D; Levi, D; Larose Cadieux, E; Lim, E; Colliver, E; Nye, E; Galvez-Cancino, F; Gimeno-Valiente, F; Kassiotis, G; Stavrou, G; Mastrokalos, G; Lowe, H; Matos, I; Noorani, I; Goldman, J; Reading, J; Rane, J; Nicod, J; Hartley, J; Peggs, K; Enfield, K; Selvaraju, K; Thol, K; Ng, K; Chen, K; Dijkstra, K; Grigoriadis, K; Thakkar, K; Ensell, L; Shah, M; Litovchenko, M; Jamal-Hanjani, M; Werner Sunderland, M; Huska, M; Hill, M; Dietzen, M; Leung, M; Escudero, M; Tanic, M; Sivakumar, M; Chervova, O; Lucas, O; Pich, O; Al-Sawaf, O; Prymas, P; Hobson, P; Pawlik, P; Stone, R; Bentham, R; Vendramin, R; Saghafinia, S; Gamble, S; Veeriah, S; Ung, S; Quezada, S; Vanloo, S; Hessey, S; Ward, S; Harries, S; Boeing, S; Beck, S; Bola, S; Karasaki, T; Denner, T; Marafioti, T; Jones, T; Spanswick, V; Barbe, V; Lu, W; Liu, W; Wu, Y; Naito, Y; Ramsden, Z; Veiga, C; Royle, G; Collins-Fekete, C; Fraioli, F; Ashford, P; Forster, M; Lee, S; Borg, E; Falzon, M; Papadatos-Pastos, D; Wilson, J; Ahmad, T; Procter, A; Ahmed, A; Taylor, M; Nair, A; Lawrence, D; Patrini, D; Navani, N; Thakrar, R; Janes, S; Martinoni Hoogenboom, E; Monk, F; Holding, J; Choudhary, J; Bhakhri, K; Scarci, M; Gorman, P; Khiroya, R; Stephens, R; Wong, Y; Kaplar, Z; Bandula, S; Hackshaw, A; Hacker, A; Sharp, A; Smith, S; Kaur Dhanda, H; Pilotti, C; Leslie, R; Grapa, A; Zhang, H; Abduljabbar, K; Pan, X; Yuan, Y; Chuter, D; Mackenzie, M; Chee, S; Alzetani, A; Cave, J; Richards, J; Lim, E; De Sousa, P; Jordan, S; Rice, A; Raubenheimer, H; Bhayani, H; Ambrose, L; Devaraj, A; Chavan, H; Begum, S; Buderi, S; Kaniu, D; Malima, M; Booth, S; Nicholson, A; Fernandes, N; Shah, P; Proli, C; Hewish, M; Danson, S; Shackcloth, M; Robinson, L; Russell, P; Blyth, K; Kidd, A; Dick, C; Le Quesne, J; Kirk, A; Asif, M; Bilancia, R; Kostoulas, N; Thomas, M; Hynds, R; Kanu, N; Zaccaria, S; Gronroos, E; Swanton, C
Replication timing alterations are associated with mutation acquisition during breast and lung cancer evolution
2024 Dietzen, M; Zhai, H; Lucas, O; Pich, O; Barrington, C; Lu, W; Ward, S; Guo, Y; Hynds, R; Zaccaria, S; Swanton, C; Mcgranahan, N; Kanu, N
The artificial intelligence-based model ANORAK improves histopathological grading of lung adenocarcinoma
2024 Pan, X; Abduljabbar, K; Coelho-Lima, J; Grapa, A; Zhang, H; Cheung, A; Baena, J; Karasaki, T; Wilson, C; Sereno, M; Veeriah, S; Aitken, S; Hackshaw, A; Nicholson, A; Jamal-Hanjani, M; Le Quesne, J; Janes, S; Hacker, A; Sharp, A; Smith, S; Dhanda, H; Chan, K; Pilotti, C; Leslie, R; Chuter, D; Mackenzie, M; Chee, S; Alzetani, A; Lim, E; De Sousa, P; Jordan, S; Rice, A; Raubenheimer, H; Bhayani, H; Ambrose, L; Devaraj, A; Chavan, H; Begum, S; Buderi, S; Kaniu, D; Malima, M; Booth, S; Fernandes, N; Shah, P; Proli, C; Hewish, M; Danson, S; Shackcloth, M; Robinson, L; Russell, P; Blyth, K; Kidd, A; Kirk, A; Asif, M; Bilancia, R; Kostoulas, N; Thomas, M; Dick, C; Lester, J; Bajaj, A; Nakas, A; Sodha-Ramdeen, A; Tufail, M; Scotland, M; Boyles, R; Rathinam, S; Fennell, D; Wilson, C; Marrone, D; Dulloo, S; Matharu, G; Shaw, J; Riley, J; Primrose, L; Boleti, E; Cheyne, H; Khalil, M; Richardson, S; Cruickshank, T; Price, G; Kerr, K; Benafif, S; Papadatos-Pastos, D; Wilson, J; Ahmad, T; French, J; Gilbert, K; Naidu, B; Patel, A; Osman, A; Lacson, C; Langman, G; Shackleford, H; Djearaman, M; Kadiri, S; Middleton, G; Leek, A; Hodgkinson, J; Totten, N; Montero, A; Smith, E; Fontaine, E; Granato, F; Novasio, J; Rammohan, K; Joseph, L; Bishop, P; Shah, R; Moss, S; Joshi, V; Crosbie, P; Paiva-Correia, A; Chaturvedi, A; Priest, L; Oliveira, P; Gomes, F; Brown, K; Carter, M; Lindsay, C; Blackhall, F; Krebs, M; Summers, Y; Clipson, A; Tugwood, J; Kerr, A; Rothwell, D; Dive, C; Aerts, H; Schwarz, R; Kaufmann, T; Van Loo, P; Wilson, G; Rosenthal, R; Rowan, A; Bailey, C; Lee, C; Colliver, E; Enfield, K; Hill, M; Angelova, M; Pich, O; Leung, M; Frankell, A; Hiley, C; Lim, E; Zhai, H; Bakir, M; Birkbak, N; Lucas, O; Huebner, A; Puttick, C; Grigoriadis, K; Dietzen, M; Biswas, D; Athanasopoulou, F; Ward, S; Demeulemeester, J; Castignani, C; Cadieux, E; Kisistok, J; Sokac, M; Szallasi, Z; Diossy, M; Salgado, R; Stewart, A; Magness, A; Weeden, C; Levi, D; Gronroos, E; Noorani, I; Goldman, J; Escudero, M; Hobson, P; Vendramin, R; Boeing, S; Denner, T; Barbe, V; Lu, W; Hill, W; Naito, Y; Ramsden, Z; Kassiotis, G; Dwornik, A; Karamani, A; Chain, B; Pearce, D; Karagianni, D; Galvez-Cancino, F; Stavrou, G; Mastrokalos, G; Lowe, H; Matos, I; Reading, J; Hartley, J; Selvaraju, K; Chen, K; Ensell, L; Shah, M; Litovchenko, M; Chervova, O; Pawlik, P; Hynds, R; Gamble, S; Ung, S; Bola, S; Spanswick, V; Wu, Y; Al-Sawaf, O; Jones, T; Beck, S; Tanic, M; Marafioti, T; Borg, E; Falzon, M; Khiroya, R; Toncheva, A; Abbosh, C; Richard, C; Naceur-Lombardelli, C; Gimeno-Valiente, F; Thakkar, K; Sunderland, M; Sivakumar, M; Kanu, N; Prymas, P; Saghafinia, S; Vanloo, S; Lam, J; Liu, W; Bunkum, A; Hessey, S; Zaccaria, S; Martinez-Ruiz, C; Black, J; Thol, K; Bentham, R; Litchfield, K; Mcgranahan, N; Quezada, S; Forster, M; Lee, S; Herrero, J; Nye, E; Stone, R; Nicod, J; Rane, J; Peggs, K; Ng, K; Dijkstra, K; Huska, M; Hoogenboom, E; Monk, F; Holding, J; Choudhary, J; Bhakhri, K; Scarci, M; Gorman, P; Stephens, R; Wong, Y; Kaplar, Z; Bandula, S; Watkins, T; Veiga, C; Royle, G; Collins-Fekete, C; Fraioli, F; Ashford, P; Procter, A; Ahmed, A; Taylor, M; Nair, A; Lawrence, D; Patrini, D; Navani, N; Thakrar, R; Swanton, C; Yuan, Y; Le Quesne, J; Moore, D
Antibodies against endogenous retroviruses promote lung cancer immunotherapy
2023 Ng, K; Boumelha, J; Enfield, K; Almagro, J; Cha, H; Pich, O; Karasaki, T; Moore, D; Salgado, R; Sivakumar, M; Young, G; Molina-Arcas, M; de Carne Trecesson, S; Anastasiou, P; Fendler, A; Au, L; Shepherd, S; Martinez-Ruiz, C; Puttick, C; Black, J; Watkins, T; Kim, H; Shim, S; Faulkner, N; Attig, J; Veeriah, S; Magno, N; Ward, S; Frankell, A; Al Bakir, M; Lim, E; Hill, M; Wilson, G; Cook, D; Birkbak, N; Behrens, A; Yousaf, N; Popat, S; Hackshaw, A; Rowan, A; Huebner, A; Campbell, B; Bailey, C; Lee, C; Biswas, D; Colliver, E; Athanasopoulou, F; Zhai, H; Rane, J; Grigoriadis, K; Dietzen, M; Leung, M; Angelova, M; Lucas, O; Al-Sawaf, O; Rosenthal, R; Nicod, J; Bunkum, A; Toncheva, A; Abbosh, C; Richard, C; Naceur-Lombardelli, C; Gimeno-Valiente, F; Lam, J; Thol, K; Thakkar, K; Werner Sunderland, M; Forster, M; Kanu, N; Prymas, P; Bentham, R; Saghafinia, S; Quezada, S; Vanloo, S; Zaccaria, S; Lee, S; Hessey, S; Liu, W; Papadatos-Pastos, D; Wilson, J; Benafif, S; Ahmad, T; Borg, E; Falzon, M; Khiroya, R; Marafioti, T; Sharp, A; Pilotti, C; Dhanda, H; Chan, K; Gower, N; Leslie, R; Smith, S; Nicholson, A; Lim, E; Herrero, J; Castignani, C; Larose Cadieux, E; Demeulemeester, J; Van Loo, P; Peggs, K; Veiga, C; Royle, G; Collins-Fekete, C; Procter, A; Nair, A; Ahmed, A; Taylor, M; Navani, N; Thakrar, R; Lawrence, D; Patrini, D; Nye, E; Stone, R; Chuter, D; Mackenzie, M; Fraioli, F; Ashford, P; Janes, S; Tanic, M; Beck, S; Rice, A; Devaraj, A; Proli, C; Kaniu, D; Bhayani, H; Chavan, H; Raubenheimer, H; Ambrose, L; Malima, M; Fernandes, N; De Sousa, P; Shah, P; Booth, S; Buderi, S; Jordan, S; Begum, S; Boleti, E; Stewart, A; Magness, A; Weeden, C; Levi, D; Gronroos, E; Goldman, J; Escudero, M; Hobson, P; Vendramin, R; Boeing, S; Denner, T; Barbe, V; Lu, W; Hill, W; Naito, Y; Ramsden, Z; Grapa, A; Zhang, H; Abduljabbar, K; Pan, X; Gilbert, K; Karamani, A; Chain, B; Pearce, D; Karagianni, D; Hoxha, E; Galvez-Cancino, F; Stavrou, G; Mastrokalos, G; Lowe, H; Matos, I; Reading, J; Hartley, J; Selvaraju, K; Chen, K; Ensell, L; Shah, M; Vasquez, M; Litovchenko, M; Chervova, O; Pawlik, P; Hynds, R; Lopez, S; Gamble, S; Ung, S; Bola, S; Mourikis, T; Spanswick, V; Wu, Y; Martinoni Hoogenboom, E; Monk, F; Holding, J; Choudhary, J; Bhakhri, K; Scarci, M; Hayward, M; Panagiotopoulos, N; Gorman, P; Stephens, R; Bandula, S; Wong, Y; Clark, T; Cheyne, H; Khalil, M; Richardson, S; Cruickshank, T; Naidu, B; Matharu, G; Shaw, J; Riley, J; Primrose, L; Le Quesne, J; Blyth, K; Kerr, A; Clipson, A; Chaturvedi, A; Dive, C; Rothwell, D; Kilgour, E; Tugwood, J; Priest, L; Oliveira, P; Crosbie, P; Price, G; Cave, J; Kerr, K; Lindsay, C; Blackhall, F; Krebs, M; Summers, Y; Kirk, A; Thomas, M; Asif, M; Kostoulas, N; Bilancia, R; Middleton, G; Shackcloth, M; Leek, A; Hodgkinson, J; Totten, N; Dick, C; Robinson, L; Russell, P; Hewish, M; Danson, S; Lester, J; Gomes, F; Brown, K; Carter, M; Patel, A; Osman, A; Lacson, C; Langman, G; Shackleford, H; Djearaman, M; Kadiri, S; Alzetani, A; Richards, J; Scarlett, L; Ingram, P; Chee, S; Austin, S; Bajaj, A; Nakas, A; Sodha-Ramdeen, A; Fennell, D; Ang, K; Tufail, M; Chowdhry, M; Scotland, M; Boyles, R; Rathinam, S; Wilson, C; Marrone, D; Dulloo, S; Montero, A; Smith, E; Fontaine, E; Granato, F; Doran, H; Novasio, J; Rammohan, K; Joseph, L; Bishop, P; Shah, R; Moss, S; Joshi, V; Aerts, H; Kaufmann, T; Schwarz, R; Kisistok, J; Sokac, M; Diossy, M; Szallasi, Z; Dijkstra, K; Yuan, Y; Byrne, F; Boos, L; Shum, B; Gerard, C; Schmitt, A; Messiou, C; Cunningham, D; Chau, I; Starling, N; Turner, N; Welsh, L; Jones, R; Droney, J; Banerjee, S; Tatham, K; Jhanji, S; Harrington, K; Okines, A; Reid, A; Young, K; Furness, A; Pickering, L; Nicholson, E; Kumar, S; Wilkinson, K; Swerdlow, A; Wilkinson, R; Hiley, C; Litchfield, K; Mcgranahan, N; Jamal-Hanjani, M; Larkin, J; Lee, S; Turajlic, S; Swanton, C; Downward, J; Kassiotis, G
Body composition and lung cancer-associated cachexia in TRACERx
2023 Al-Sawaf, O; Weiss, J; Skrzypski, M; Lam, J; Karasaki, T; Zambrana, F; Kidd, A; Frankell, A; Watkins, T; Martinez-Ruiz, C; Puttick, C; Black, J; Huebner, A; Bakir, M; Sokac, M; Collins, S; Veeriah, S; Magno, N; Naceur-Lombardelli, C; Prymas, P; Toncheva, A; Ward, S; Jayanth, N; Salgado, R; Bridge, C; Christiani, D; Mak, R; Bay, C; Rosenthal, M; Sattar, N; Welsh, P; Liu, Y; Perrimon, N; Popuri, K; Beg, M; Mcgranahan, N; Hackshaw, A; Breen, D; O'Rahilly, S; Birkbak, N; Aerts, H; Watkins, T; Aerts, H; Lester, J; Bajaj, A; Nakas, A; Sodha-Ramdeen, A; Ang, K; Tufail, M; Chowdhry, M; Scotland, M; Boyles, R; Rathinam, S; Wilson, C; Marrone, D; Dulloo, S; Fennell, D; Matharu, G; Shaw, J; Riley, J; Primrose, L; Boleti, E; Cheyne, H; Khalil, M; Richardson, S; Cruickshank, T; Price, G; Kerr, K; Benafif, S; Gilbert, K; Naidu, B; Patel, A; Osman, A; Lacson, C; Langman, G; Shackleford, H; Djearaman, M; Kadiri, S; Middleton, G; Leek, A; Hodgkinson, J; Totten, N; Montero, A; Smith, E; Fontaine, E; Granato, F; Doran, H; Novasio, J; Rammohan, K; Joseph, L; Bishop, P; Shah, R; Moss, S; Joshi, V; Crosbie, P; Gomes, F; Brown, K; Carter, M; Chaturvedi, A; Priest, L; Oliveira, P; Lindsay, C; Blackhall, F; Krebs, M; Summers, Y; Clipson, A; Tugwood, J; Kerr, A; Rothwell, D; Kilgour, E; Dive, C; Schwarz, R; Kaufmann, T; Wilson, G; Rosenthal, R; Van Loo, P; Szallasi, Z; Kisistok, J; Sokac, M; Diossy, M; Demeulemeester, J; Bunkum, A; Stewart, A; Magness, A; Rowan, A; Karamani, A; Chain, B; Campbell, B; Castignani, C; Bailey, C; Abbosh, C; Weeden, C; Lee, C; Richard, C; Hiley, C; Moore, D; Pearce, D; Karagianni, D; Biswas, D; Levi, D; Hoxha, E; Cadieux, E; Lim, E; Colliver, E; Nye, E; Gronroos, E; Galvez-Cancino, F; Athanasopoulou, F; Gimeno-Valiente, F; Kassiotis, G; Stavrou, G; Mastrokalos, G; Zhai, H; Lowe, H; Matos, I; Goldman, J; Reading, J; Herrero, J; Rane, J; Nicod, J; Hartley, J; Peggs, K; Enfield, K; Selvaraju, K; Thol, K; Litchfield, K; Ng, K; Chen, K; Dijkstra, K; Grigoriadis, K; Thakkar, K; Ensell, L; Shah, M; Duran, M; Litovchenko, M; Sunderland, M; Hill, M; Dietzen, M; Leung, M; Escudero, M; Angelova, M; Tanic, M; Sivakumar, M; Kanu, N; Chervova, O; Lucas, O; Pich, O; Hobson, P; Pawlik, P; Stone, R; Bentham, R; Hynds, R; Vendramin, R; Saghafinia, S; Lopez, S; Gamble, S; Ung, S; Quezada, S; Vanloo, S; Zaccaria, S; Hessey, S; Boeing, S; Beck, S; Bola, S; Denner, T; Marafioti, T; Mourikis, T; Spanswick, V; Barbe, V; Lu, W; Hill, W; Liu, W; Wu, Y; Naito, Y; Ramsden, Z; Veiga, C; Royle, G; Collins-Fekete, C; Fraioli, F; Ashford, P; Clark, T; Forster, M; Lee, S; Borg, E; Falzon, M; Papadatos-Pastos, D; Wilson, J; Ahmad, T; Procter, A; Ahmed, A; Taylor, M; Nair, A; Lawrence, D; Patrini, D; Navani, N; Thakrar, R; Janes, S; Hoogenboom, E; Monk, F; Holding, J; Choudhary, J; Bhakhri, K; Scarci, M; Hayward, M; Panagiotopoulos, N; Gorman, P; Khiroya, R; Stephens, R; Wong, Y; Bandula, S; Sharp, A; Smith, S; Gower, N; Dhanda, H; Chan, K; Pilotti, C; Leslie, R; Grapa, A; Zhang, H; Abduljabbar, K; Pan, X; Yuan, Y; Chuter, D; Mackenzie, M; Chee, S; Alzetani, A; Cave, J; Scarlett, L; Richards, J; Ingram, P; Austin, S; Lim, E; De Sousa, P; Jordan, S; Rice, A; Raubenheimer, H; Bhayani, H; Ambrose, L; Devaraj, A; Chavan, H; Begum, S; Buderi, S; Kaniu, D; Malima, M; Booth, S; Nicholson, A; Fernandes, N; Shah, P; Proli, C; Hewish, M; Danson, S; Shackcloth, M; Robinson, L; Russell, P; Blyth, K; Dick, C; Le Quesne, J; Kirk, A; Asif, M; Bilancia, R; Kostoulas, N; Thomas, M; Jamal-Hanjani, M; Swanton, C
Copy number architectures define treatment-mediated selection of lethal prostate cancer clones
2023 Hasan, A; Cremaschi, P; Wetterskog, D; Jayaram, A; Wong, S; Williams, S; Pasam, A; Trigos, A; Trujillo, B; Grist, E; Friedrich, S; Vainauskas, O; Parry, M; Ismail, M; Devlies, W; Wingate, A; Linch, M; Naceur-Lombardelli, C; Zaccaria, S; Hessey, S; Shiu, K; Bridgewater, J; Hochhauser, D; Forster, M; Lee, S; Ahmad, T; Papadatos-Pastos, D; Janes, S; Van Loo, P; Enfield, K; Mcgranahan, N; Huebner, A; Quezada, S; Beck, S; Parker, P; Enver, T; Hynds, R; Pearce, D; Falzon, M; Proctor, I; Sinclair, R; Lok, C; Rhodes, Z; Moore, D; Marafioti, T; Mitchison, M; Ellery, P; Sivakumar, M; Linch, M; Brandner, S; Rowan, A; Hiley, C; Veeriah, S; Shaw, H; Naceur-Lombardelli, C; Toncheva, A; Prymas, P; Watkins, T; Bailey, C; Martinez Ruiz, C; Litchfield, K; Al-Bakir, M; Kanu, N; Ward, S; Lim, E; Reading, J; Chain, B; Watkins, T; Akay, M; Flanagan, A; Biswas, D; Pich, O; Dietzen, M; Puttick, C; Colliver, E; Magness, A; Angelova, M; Black, J; Lucas, O; Hill, W; Liu, W; Frankell, A; Magno, N; Athanasopoulou, F; Salgado, R; Lee, C; Grigoriadis, K; Al-Sawaf, O; Karasaki, T; Bunkum, A; Noorani, I; Benafif, S; Barbe, V; Bola, S; Leone, G; Alifrangis, C; Mcgovern, U; Thol, K; Gamble, S; Ung, S; Sahwangarrom, T; Marin, C; Wong, S; Pawlik, P; Lam, J; Richard, C; Vendramin, R; Dijkstra, K; Rane, J; Nicod, J; Dwornik, A; Bowles, K; Zaidi, R; Gishen, F; Stone, P; Stirling, C; Turajlic, S; Larkin, J; Pickering, L; Furness, A; Young, K; Drake, W; Edmonds, K; Hunter, N; Mangwende, M; Pearce, K; Grostate, L; Au, L; Spain, L; Shepherd, S; Yan, H; Shum, B; Tippu, Z; Hanley, B; Spencer, C; Emmerich, M; Gerard, C; Schmitt, A; Del Rosario, L; Carlyle, E; Lewis, C; Holt, L; Lucanas, A; O'Flaherty, M; Hazell, S; Mudhar, H; Messiou, C; Latifoltojar, A; Fendler, A; Byrne, F; Pallikonda, H; Lobon, I; Coulton, A; Cattin, A; Deng, D; Feng, H; Rowan, A; Yousaf, N; Popat, S; Curtis, O; Milner-Watts, C; Stamp, G; Nye, E; Murra, A; Korteweg, J; Kelly, D; Terry, L; Biano, J; Peat, K; Kelly, K; Grieco, C; Le, M; D'Arienzo, P; Turay, E; Hill, P; Josephs, D; Irshad, S; Spicer, J; Mahadeva, U; Green, A; Stewart, R; Wright, N; Pulman, G; Mitu, R; Phillips-Boyd, S; Enting, D; Rudman, S; Ghosh, S; Karapanagiotou, E; Pintus, E; Tutt, A; Howlett, S; Brenton, J; Caldas, C; Fitzgerald, R; Jimenez-Linan, M; Provenzano, E; Cluroe, A; Paterson, A; Aitken, S; Allinson, K; Stewart, G; Mcdermott, U; Beddowes, E; Maughan, T; Ansorge, O; Campbell, P; Roxburgh, P; Fraser, S; Blyth, K; Le Quesne, J; Krebs, M; Blackhall, F; Summers, Y; Oliveira, P; Ortega-Franco, A; Dive, C; Gomes, F; Carter, M; Dransfield, J; Thomas, A; Fennell, D; Shaw, J; Wilson, C; Marrone, D; Naidu, B; Baijal, S; Tanchel, B; Langman, G; Robinson, A; Collard, M; Cockcroft, P; Ferris, C; Bancroft, H; Kerr, A; Middleton, G; Webb, J; Kadiri, S; Colloby, P; Olisemeke, B; Wilson, R; Shackleford, H; Osman, A; Tomlinson, I; Jogai, S; Holden, S; Fernandes, T; Mcneish, I; Hampton, B; Mckenzie, M; Hackshaw, A; Sharp, A; Chan, K; Farrelly, L; Bridger, H; Leslie, R; Tookman, A; Swanton, C; Jamal-Hanjani, M; Lise, S; Sandhu, S; Attard, G
Evolutionary characterization of lung adenocarcinoma morphology in TRACERx
2023 Karasaki, T; Moore, D; Veeriah, S; Naceur-Lombardelli, C; Toncheva, A; Magno, N; Ward, S; Bakir, M; Watkins, T; Grigoriadis, K; Huebner, A; Hill, M; Frankell, A; Abbosh, C; Puttick, C; Zhai, H; Gimeno-Valiente, F; Saghafinia, S; Kanu, N; Dietzen, M; Pich, O; Lim, E; Martinez-Ruiz, C; Black, J; Biswas, D; Campbell, B; Lee, C; Colliver, E; Enfield, K; Hessey, S; Hiley, C; Zaccaria, S; Litchfield, K; Birkbak, N; Cadieux, E; Demeulemeester, J; Van Loo, P; Adusumilli, P; Tan, K; Cheema, W; Sanchez-Vega, F; Jones, D; Rekhtman, N; Travis, W; Hackshaw, A; Marafioti, T; Salgado, R; Le Quesne, J; Nicholson, A; Van Loo, P; Le Quesne, J; Lester, J; Bajaj, A; Nakas, A; Sodha-Ramdeen, A; Ang, K; Tufail, M; Chowdhry, M; Scotland, M; Boyles, R; Rathinam, S; Wilson, C; Marrone, D; Dulloo, S; Fennell, D; Matharu, G; Shaw, J; Riley, J; Primrose, L; Boleti, E; Cheyne, H; Khalil, M; Richardson, S; Cruickshank, T; Price, G; Kerr, K; Benafif, S; Gilbert, K; Naidu, B; Patel, A; Osman, A; Lacson, C; Langman, G; Shackleford, H; Djearaman, M; Kadiri, S; Middleton, G; Leek, A; Hodgkinson, J; Totten, N; Montero, A; Smith, E; Fontaine, E; Granato, F; Doran, H; Novasio, J; Rammohan, K; Joseph, L; Bishop, P; Shah, R; Moss, S; Joshi, V; Crosbie, P; Gomes, F; Brown, K; Carter, M; Chaturvedi, A; Priest, L; Oliveira, P; Lindsay, C; Blackhall, F; Krebs, M; Summers, Y; Clipson, A; Tugwood, J; Kerr, A; Rothwell, D; Kilgour, E; Dive, C; Aerts, H; Schwarz, R; Kaufmann, T; Wilson, G; Rosenthal, R; Szallasi, Z; Kisistok, J; Sokac, M; Diossy, M; Bunkum, A; Stewart, A; Magness, A; Rowan, A; Karamani, A; Chain, B; Castignani, C; Bailey, C; Weeden, C; Richard, C; Pearce, D; Karagianni, D; Levi, D; Hoxha, E; Nye, E; Gronroos, E; Galvez-Cancino, F; Athanasopoulou, F; Kassiotis, G; Stavrou, G; Mastrokalos, G; Lowe, H; Matos, I; Goldman, J; Reading, J; Herrero, J; Rane, J; Nicod, J; Lam, J; Hartley, J; Peggs, K; Selvaraju, K; Thol, K; Ng, K; Chen, K; Dijkstra, K; Thakkar, K; Ensell, L; Shah, M; Duran, M; Litovchenko, M; Sunderland, M; Leung, M; Escudero, M; Angelova, M; Tanic, M; Sivakumar, M; Chervova, O; Lucas, O; Al-Sawaf, O; Prymas, P; Hobson, P; Pawlik, P; Stone, R; Bentham, R; Hynds, R; Vendramin, R; Lopez, S; Gamble, S; Ung, S; Quezada, S; Vanloo, S; Boeing, S; Beck, S; Bola, S; Denner, T; Mourikis, T; Spanswick, V; Barbe, V; Lu, W; Hill, W; Liu, W; Wu, Y; Naito, Y; Ramsden, Z; Veiga, C; Royle, G; Collins-Fekete, C; Fraioli, F; Ashford, P; Clark, T; Forster, M; Lee, S; Borg, E; Falzon, M; Papadatos-Pastos, D; Wilson, J; Ahmad, T; Procter, A; Ahmed, A; Taylor, M; Nair, A; Lawrence, D; Patrini, D; Navani, N; Thakrar, R; Janes, S; Hoogenboom, E; Monk, F; Holding, J; Choudhary, J; Bhakhri, K; Scarci, M; Hayward, M; Panagiotopoulos, N; Gorman, P; Khiroya, R; Stephens, R; Wong, Y; Bandula, S; Sharp, A; Smith, S; Gower, N; Dhanda, H; Chan, K; Pilotti, C; Leslie, R; Grapa, A; Zhang, H; Abduljabbar, K; Pan, X; Yuan, Y; Chuter, D; Mackenzie, M; Chee, S; Alzetani, A; Cave, J; Scarlett, L; Richards, J; Ingram, P; Austin, S; Lim, E; De Sousa, P; Jordan, S; Rice, A; Raubenheimer, H; Bhayani, H; Ambrose, L; Devaraj, A; Chavan, H; Begum, S; Buderi, S; Kaniu, D; Malima, M; Booth, S; Fernandes, N; Shah, P; Proli, C; Hewish, M; Danson, S; Shackcloth, M; Robinson, L; Russell, P; Blyth, K; Dick, C; Kirk, A; Asif, M; Bilancia, R; Kostoulas, N; Thomas, M; Mcgranahan, N; Swanton, C; Jamal-Hanjani, M
Genomic–transcriptomic evolution in lung cancer and metastasis
2023 Martinez-Ruiz, C; Black, J; Puttick, C; Hill, M; Demeulemeester, J; Larose Cadieux, E; Thol, K; Jones, T; Veeriah, S; Naceur-Lombardelli, C; Toncheva, A; Prymas, P; Rowan, A; Ward, S; Cubitt, L; Athanasopoulou, F; Pich, O; Karasaki, T; Moore, D; Salgado, R; Colliver, E; Castignani, C; Dietzen, M; Huebner, A; Al Bakir, M; Tanic, M; Watkins, T; Lim, E; Al-Rashed, A; Lang, D; Clements, J; Cook, D; Rosenthal, R; Wilson, G; Frankell, A; de Carne Trecesson, S; East, P; Kanu, N; Litchfield, K; Birkbak, N; Hackshaw, A; Beck, S; Van Loo, P; Jamal-Hanjani, M; Mcgranahan, N; Swanton, C; Bakir, M; Lim, E; Frankell, A; Litchfield, K; Van Loo, P; Lester, J; Bajaj, A; Nakas, A; Sodha-Ramdeen, A; Ang, K; Tufail, M; Chowdhry, M; Scotland, M; Boyles, R; Rathinam, S; Wilson, C; Marrone, D; Dulloo, S; Fennell, D; Matharu, G; Shaw, J; Riley, J; Primrose, L; Boleti, E; Cheyne, H; Khalil, M; Richardson, S; Cruickshank, T; Price, G; Kerr, K; Benafif, S; Gilbert, K; Naidu, B; Patel, A; Osman, A; Lacson, C; Langman, G; Shackleford, H; Djearaman, M; Kadiri, S; Middleton, G; Leek, A; Hodgkinson, J; Totten, N; Montero, A; Smith, E; Fontaine, E; Granato, F; Doran, H; Novasio, J; Rammohan, K; Joseph, L; Bishop, P; Shah, R; Moss, S; Joshi, V; Crosbie, P; Gomes, F; Brown, K; Carter, M; Chaturvedi, A; Priest, L; Oliveira, P; Lindsay, C; Blackhall, F; Krebs, M; Summers, Y; Clipson, A; Tugwood, J; Kerr, A; Rothwell, D; Kilgour, E; Dive, C; Aerts, H; Schwarz, R; Kaufmann, T; Szallasi, Z; Kisistok, J; Sokac, M; Diossy, M; Bunkum, A; Stewart, A; Magness, A; Karamani, A; Chain, B; Campbell, B; Bailey, C; Abbosh, C; Weeden, C; Lee, C; Richard, C; Hiley, C; Pearce, D; Karagianni, D; Biswas, D; Levi, D; Hoxha, E; Nye, E; Gronroos, E; Galvez-Cancino, F; Gimeno-Valiente, F; Kassiotis, G; Stavrou, G; Mastrokalos, G; Zhai, H; Lowe, H; Matos, I; Goldman, J; Reading, J; Herrero, J; Rane, J; Nicod, J; Lam, J; Hartley, J; Peggs, K; Enfield, K; Selvaraju, K; Ng, K; Chen, K; Dijkstra, K; Grigoriadis, K; Thakkar, K; Ensell, L; Shah, M; Duran, M; Litovchenko, M; Sunderland, M; Leung, M; Escudero, M; Angelova, M; Sivakumar, M; Chervova, O; Lucas, O; Al-Sawaf, O; Hobson, P; Pawlik, P; Stone, R; Bentham, R; Hynds, R; Vendramin, R; Saghafinia, S; Lopez, S; Gamble, S; Ung, S; Quezada, S; Vanloo, S; Zaccaria, S; Hessey, S; Boeing, S; Bola, S; Denner, T; Marafioti, T; Mourikis, T; Spanswick, V; Barbe, V; Lu, W; Hill, W; Liu, W; Wu, Y; Naito, Y; Ramsden, Z; Veiga, C; Royle, G; Collins-Fekete, C; Fraioli, F; Ashford, P; Clark, T; Forster, M; Lee, S; Borg, E; Falzon, M; Papadatos-Pastos, D; Wilson, J; Ahmad, T; Procter, A; Ahmed, A; Taylor, M; Nair, A; Lawrence, D; Patrini, D; Navani, N; Thakrar, R; Janes, S; Hoogenboom, E; Monk, F; Holding, J; Choudhary, J; Bhakhri, K; Scarci, M; Hayward, M; Panagiotopoulos, N; Gorman, P; Khiroya, R; Stephens, R; Wong, Y; Bandula, S; Sharp, A; Smith, S; Gower, N; Dhanda, H; Chan, K; Pilotti, C; Leslie, R; Grapa, A; Zhang, H; Abduljabbar, K; Pan, X; Yuan, Y; Chuter, D; Mackenzie, M; Chee, S; Alzetani, A; Cave, J; Scarlett, L; Richards, J; Ingram, P; Austin, S; Lim, E; De Sousa, P; Jordan, S; Rice, A; Raubenheimer, H; Bhayani, H; Ambrose, L; Devaraj, A; Chavan, H; Begum, S; Buderi, S; Kaniu, D; Malima, M; Booth, S; Nicholson, A; Fernandes, N; Shah, P; Proli, C; Hewish, M; Danson, S; Shackcloth, M; Robinson, L; Russell, P; Blyth, K; Dick, C; Le Quesne, J; Kirk, A; Asif, M; Bilancia, R; Kostoulas, N; Thomas, M; Mcgranahan, N
Insights into the metastatic cascade through research autopsies
2023 Hessey, S; Fessas, P; Zaccaria, S; Jamal-Hanjani, M; Swanton, C
Lung adenocarcinoma promotion by air pollutants
2023 Hill, W; Lim, E; Weeden, C; Lee, C; Augustine, M; Chen, K; Kuan, F; Marongiu, F; Evans, E; Moore, D; Rodrigues, F; Pich, O; Bakker, B; Cha, H; Myers, R; van Maldegem, F; Boumelha, J; Veeriah, S; Rowan, A; Naceur-Lombardelli, C; Karasaki, T; Sivakumar, M; De, S; Caswell, D; Nagano, A; Black, J; Martinez-Ruiz, C; Ryu, M; Huff, R; Li, S; Fave, M; Magness, A; Suarez-Bonnet, A; Priestnall, S; Luchtenborg, M; Lavelle, K; Pethick, J; Hardy, S; Mcronald, F; Lin, M; Troccoli, C; Ghosh, M; Miller, Y; Merrick, D; Keith, R; Al Bakir, M; Bailey, C; Hill, M; Saal, L; Chen, Y; George, A; Abbosh, C; Kanu, N; Lee, S; Mcgranahan, N; Berg, C; Sasieni, P; Houlston, R; Turnbull, C; Lam, S; Awadalla, P; Gronroos, E; Downward, J; Jacks, T; Carlsten, C; Malanchi, I; Hackshaw, A; Litchfield, K; Lester, J; Bajaj, A; Nakas, A; Sodha-Ramdeen, A; Ang, K; Tufail, M; Chowdhry, M; Scotland, M; Boyles, R; Rathinam, S; Wilson, C; Marrone, D; Dulloo, S; Fennell, D; Matharu, G; Shaw, J; Riley, J; Primrose, L; Boleti, E; Cheyne, H; Khalil, M; Richardson, S; Cruickshank, T; Price, G; Kerr, K; Benafif, S; Gilbert, K; Naidu, B; Patel, A; Osman, A; Lacson, C; Langman, G; Shackleford, H; Djearaman, M; Kadiri, S; Middleton, G; Leek, A; Hodgkinson, J; Totten, N; Montero, A; Smith, E; Fontaine, E; Granato, F; Doran, H; Novasio, J; Rammohan, K; Joseph, L; Bishop, P; Shah, R; Moss, S; Joshi, V; Crosbie, P; Gomes, F; Brown, K; Carter, M; Chaturvedi, A; Priest, L; Oliveira, P; Lindsay, C; Blackhall, F; Krebs, M; Summers, Y; Clipson, A; Tugwood, J; Kerr, A; Rothwell, D; Kilgour, E; Dive, C; Aerts, H; Schwarz, R; Kaufmann, T; Wilson, G; Rosenthal, R; Van Loo, P; Birkbak, N; Szallasi, Z; Kisistok, J; Sokac, M; Salgado, R; Diossy, M; Demeulemeester, J; Bunkum, A; Stewart, A; Frankell, A; Karamani, A; Toncheva, A; Huebner, A; Chain, B; Campbell, B; Castignani, C; Puttick, C; Richard, C; Hiley, C; Pearce, D; Karagianni, D; Biswas, D; Levi, D; Hoxha, E; Cadieux, E; Colliver, E; Nye, E; Galvez-Cancino, F; Athanasopoulou, F; Gimeno-Valiente, F; Kassiotis, G; Stavrou, G; Mastrokalos, G; Zhai, H; Lowe, H; Matos, I; Goldman, J; Reading, J; Herrero, J; Rane, J; Nicod, J; Lam, J; Hartley, J; Peggs, K; Enfield, K; Selvaraju, K; Thol, K; Ng, K; Dijkstra, K; Grigoriadis, K; Thakkar, K; Ensell, L; Shah, M; Duran, M; Litovchenko, M; Sunderland, M; Dietzen, M; Leung, M; Escudero, M; Angelova, M; Tanic, M; Chervova, O; Lucas, O; Al-Sawaf, O; Prymas, P; Hobson, P; Pawlik, P; Stone, R; Bentham, R; Hynds, R; Vendramin, R; Saghafinia, S; Lopez, S; Gamble, S; Ung, S; Quezada, S; Vanloo, S; Zaccaria, S; Hessey, S; Ward, S; Boeing, S; Beck, S; Bola, S; Denner, T; Marafioti, T; Mourikis, T; Watkins, T; Spanswick, V; Barbe, V; Lu, W; Liu, W; Wu, Y; Naito, Y; Ramsden, Z; Veiga, C; Royle, G; Collins-Fekete, C; Fraioli, F; Ashford, P; Clark, T; Forster, M; Lee, S; Borg, E; Falzon, M; Papadatos-Pastos, D; Wilson, J; Ahmad, T; Procter, A; Ahmed, A; Taylor, M; Nair, A; Lawrence, D; Patrini, D; Navani, N; Thakrar, R; Janes, S; Hoogenboom, E; Monk, F; Holding, J; Choudhary, J; Bhakhri, K; Scarci, M; Hayward, M; Panagiotopoulos, N; Gorman, P; Khiroya, R; Stephens, R; Wong, Y; Bandula, S; Sharp, A; Smith, S; Gower, N; Dhanda, H; Chan, K; Pilotti, C; Leslie, R; Grapa, A; Zhang, H; Abduljabbar, K; Pan, X; Yuan, Y; Chuter, D; Mackenzie, M; Chee, S; Alzetani, A; Cave, J; Scarlett, L; Richards, J; Ingram, P; Austin, S; Lim, E; De Sousa, P; Jordan, S; Rice, A; Raubenheimer, H; Bhayani, H; Ambrose, L; Devaraj, A; Chavan, H; Begum, S; Buderi, S; Kaniu, D; Malima, M; Booth, S; Nicholson, A; Fernandes, N; Shah, P; Proli, C; Hewish, M; Danson, S; Shackcloth, M; Robinson, L; Russell, P; Blyth, K; Dick, C; Le Quesne, J; Kirk, A; Asif, M; Bilancia, R; Kostoulas, N; Thomas, M; Degregori, J; Jamal-Hanjani, M; Swanton, C
Quantifying the impact of immunotherapy on RNA dynamics in cancer
2023 Usaite, I; Biswas, D; Dijkstra, K; Watkins, T; Pich, O; Puttick, C; Angelova, M; Thakkar, K; Hiley, C; Birkbak, N; Kok, M; Zaccaria, S; Wu, Y; Litchfield, K; Swanton, C; Kanu, N
Structurally Complex Osteosarcoma Genomes Exhibit Limited Heterogeneity within Individual Tumors and across Evolutionary Time
2023 Rajan, S; Zaccaria, S; Cannon, M; Cam, M; Gross, A; Raphael, B; Roberts, R
Subclonal Somatic Copy-Number Alterations Emerge and Dominate in Recurrent Osteosarcoma
2023 Kinnaman, M; Zaccaria, S; Makohon-Moore, A; Arnold, B; Levine, M; Gundem, G; Arango Ossa, J; Glodzik, D; Rodriguez-Sanchez, M; Bouvier, N; Li, S; Stockfisch, E; Dunigan, M; Cobbs, C; Bhanot, U; You, D; Mullen, K; Melchor, J; Ortiz, M; O'Donohue, T; Slotkin, E; Wexler, L; Dela Cruz, F; Hameed, M; Glade Bender, J; Tap, W; Meyers, P; Papaemmanuil, E; Kung, A; Iacobuzio-Donahue, C
The evolution of lung cancer and impact of subclonal selection in TRACERx
2023 Frankell, A; Dietzen, M; Al Bakir, M; Lim, E; Karasaki, T; Ward, S; Veeriah, S; Colliver, E; Huebner, A; Bunkum, A; Hill, M; Grigoriadis, K; Moore, D; Black, J; Liu, W; Thol, K; Pich, O; Watkins, T; Naceur-Lombardelli, C; Cook, D; Salgado, R; Wilson, G; Bailey, C; Angelova, M; Bentham, R; Martinez-Ruiz, C; Abbosh, C; Nicholson, A; Le Quesne, J; Biswas, D; Rosenthal, R; Puttick, C; Hessey, S; Lee, C; Prymas, P; Toncheva, A; Smith, J; Xing, W; Nicod, J; Price, G; Kerr, K; Naidu, B; Middleton, G; Blyth, K; Fennell, D; Forster, M; Lee, S; Falzon, M; Hewish, M; Shackcloth, M; Lim, E; Benafif, S; Russell, P; Boleti, E; Krebs, M; Lester, J; Papadatos-Pastos, D; Ahmad, T; Thakrar, R; Lawrence, D; Navani, N; Janes, S; Dive, C; Blackhall, F; Summers, Y; Cave, J; Marafioti, T; Herrero, J; Quezada, S; Peggs, K; Schwarz, R; Van Loo, P; Miedema, D; Birkbak, N; Hiley, C; Hackshaw, A; Zaccaria, S; Le Quesne, J; Van Loo, P; Bajaj, A; Nakas, A; Sodha-Ramdeen, A; Ang, K; Tufail, M; Chowdhry, M; Scotland, M; Boyles, R; Rathinam, S; Wilson, C; Marrone, D; Dulloo, S; Matharu, G; Shaw, J; Riley, J; Primrose, L; Cheyne, H; Khalil, M; Richardson, S; Cruickshank, T; Gilbert, K; Patel, A; Osman, A; Lacson, C; Langman, G; Shackleford, H; Djearaman, M; Kadiri, S; Leek, A; Hodgkinson, J; Totten, N; Montero, A; Smith, E; Fontaine, E; Granato, F; Doran, H; Novasio, J; Rammohan, K; Joseph, L; Bishop, P; Shah, R; Moss, S; Joshi, V; Crosbie, P; Gomes, F; Brown, K; Carter, M; Chaturvedi, A; Priest, L; Oliveira, P; Lindsay, C; Clipson, A; Tugwood, J; Kerr, A; Rothwell, D; Kilgour, E; Aerts, H; Kaufmann, T; Szallasi, Z; Kisistok, J; Sokac, M; Diossy, M; Demeulemeester, J; Stewart, A; Magness, A; Rowan, A; Karamani, A; Chain, B; Campbell, B; Castignani, C; Weeden, C; Richard, C; Pearce, D; Karagianni, D; Levi, D; Hoxha, E; Larose Cadieux, E; Nye, E; Gronroos, E; Galvez-Cancino, F; Athanasopoulou, F; Gimeno-Valiente, F; Kassiotis, G; Stavrou, G; Mastrokalos, G; Zhai, H; Lowe, H; Matos, I; Goldman, J; Reading, J; Rane, J; Lam, J; Hartley, J; Enfield, K; Selvaraju, K; Litchfield, K; Ng, K; Chen, K; Dijkstra, K; Thakkar, K; Ensell, L; Shah, M; Vasquez, M; Litovchenko, M; Werner Sunderland, M; Leung, M; Escudero, M; Tanic, M; Sivakumar, M; Kanu, N; Chervova, O; Lucas, O; Al-Sawaf, O; Hobson, P; Pawlik, P; Stone, R; Hynds, R; Vendramin, R; Saghafinia, S; Lopez, S; Gamble, S; Ung, S; Vanloo, S; Boeing, S; Beck, S; Bola, S; Denner, T; Mourikis, T; Spanswick, V; Barbe, V; Lu, W; Hill, W; Wu, Y; Naito, Y; Ramsden, Z; Veiga, C; Royle, G; Collins-Fekete, C; Fraioli, F; Ashford, P; Clark, T; Borg, E; Wilson, J; Procter, A; Ahmed, A; Taylor, M; Nair, A; Patrini, D; Martinoni Hoogenboom, E; Monk, F; Holding, J; Choudhary, J; Bhakhri, K; Scarci, M; Hayward, M; Panagiotopoulos, N; Gorman, P; Khiroya, R; Stephens, R; Wong, Y; Bandula, S; Sharp, A; Smith, S; Gower, N; Dhanda, H; Chan, K; Pilotti, C; Leslie, R; Grapa, A; Zhang, H; Abduljabbar, K; Pan, X; Yuan, Y; Chuter, D; Mackenzie, M; Chee, S; Alzetani, A; Scarlett, L; Richards, J; Ingram, P; Austin, S; De Sousa, P; Jordan, S; Rice, A; Raubenheimer, H; Bhayani, H; Ambrose, L; Devaraj, A; Chavan, H; Begum, S; Buderi, S; Kaniu, D; Malima, M; Booth, S; Fernandes, N; Shah, P; Proli, C; Danson, S; Robinson, L; Dick, C; Kirk, A; Asif, M; Bilancia, R; Kostoulas, N; Thomas, M; Jamal-Hanjani, M; Mcgranahan, N; Swanton, C
The evolution of non-small cell lung cancer metastases in TRACERx
2023 Al Bakir, M; Huebner, A; Martinez-Ruiz, C; Grigoriadis, K; Watkins, T; Pich, O; Moore, D; Veeriah, S; Ward, S; Laycock, J; Johnson, D; Rowan, A; Razaq, M; Akther, M; Naceur-Lombardelli, C; Prymas, P; Toncheva, A; Hessey, S; Dietzen, M; Colliver, E; Frankell, A; Bunkum, A; Lim, E; Karasaki, T; Abbosh, C; Hiley, C; Hill, M; Cook, D; Wilson, G; Salgado, R; Nye, E; Stone, R; Fennell, D; Price, G; Kerr, K; Naidu, B; Middleton, G; Summers, Y; Lindsay, C; Blackhall, F; Cave, J; Blyth, K; Nair, A; Ahmed, A; Taylor, M; Procter, A; Falzon, M; Lawrence, D; Navani, N; Thakrar, R; Janes, S; Papadatos-Pastos, D; Forster, M; Lee, S; Ahmad, T; Quezada, S; Peggs, K; Van Loo, P; Dive, C; Hackshaw, A; Birkbak, N; Zaccaria, S; Lester, J; Bajaj, A; Nakas, A; Sodha-Ramdeen, A; Ang, K; Tufail, M; Chowdhry, M; Scotland, M; Boyles, R; Rathinam, S; Wilson, C; Marrone, D; Dulloo, S; Matharu, G; Shaw, J; Riley, J; Primrose, L; Boleti, E; Cheyne, H; Khalil, M; Richardson, S; Cruickshank, T; Benafif, S; Gilbert, K; Patel, A; Osman, A; Lacson, C; Langman, G; Shackleford, H; Djearaman, M; Kadiri, S; Leek, A; Hodgkinson, J; Totten, N; Montero, A; Smith, E; Fontaine, E; Granato, F; Doran, H; Novasio, J; Rammohan, K; Joseph, L; Bishop, P; Shah, R; Moss, S; Joshi, V; Crosbie, P; Gomes, F; Brown, K; Carter, M; Chaturvedi, A; Priest, L; Oliveira, P; Krebs, M; Clipson, A; Tugwood, J; Kerr, A; Rothwell, D; Kilgour, E; Aerts, H; Schwarz, R; Kaufmann, T; Rosenthal, R; Szallasi, Z; Kisistok, J; Sokac, M; Diossy, M; Demeulemeester, J; Stewart, A; Magness, A; Karamani, A; Chain, B; Campbell, B; Castignani, C; Bailey, C; Puttick, C; Weeden, C; Lee, C; Richard, C; Pearce, D; Karagianni, D; Biswas, D; Levi, D; Hoxha, E; Larose Cadieux, E; Gronroos, E; Galvez-Cancino, F; Athanasopoulou, F; Gimeno-Valiente, F; Kassiotis, G; Stavrou, G; Mastrokalos, G; Zhai, H; Lowe, H; Matos, I; Goldman, J; Reading, J; Black, J; Herrero, J; Rane, J; Nicod, J; Lam, J; Hartley, J; Enfield, K; Selvaraju, K; Thol, K; Litchfield, K; Ng, K; Chen, K; Dijkstra, K; Thakkar, K; Ensell, L; Shah, M; Vasquez, M; Litovchenko, M; Werner Sunderland, M; Leung, M; Escudero, M; Angelova, M; Tanic, M; Sivakumar, M; Kanu, N; Chervova, O; Lucas, O; Al-Sawaf, O; Hobson, P; Pawlik, P; Bentham, R; Hynds, R; Vendramin, R; Saghafinia, S; Lopez, S; Gamble, S; Ung, S; Vanloo, S; Boeing, S; Beck, S; Bola, S; Denner, T; Marafioti, T; Mourikis, T; Spanswick, V; Barbe, V; Lu, W; Hill, W; Liu, W; Wu, Y; Naito, Y; Ramsden, Z; Veiga, C; Royle, G; Collins-Fekete, C; Fraioli, F; Ashford, P; Clark, T; Borg, E; Wilson, J; Patrini, D; Martinoni Hoogenboom, E; Monk, F; Holding, J; Choudhary, J; Bhakhri, K; Scarci, M; Hayward, M; Panagiotopoulos, N; Gorman, P; Khiroya, R; Stephens, R; Wong, Y; Bandula, S; Sharp, A; Smith, S; Gower, N; Dhanda, H; Chan, K; Pilotti, C; Leslie, R; Grapa, A; Zhang, H; Abduljabbar, K; Pan, X; Yuan, Y; Chuter, D; Mackenzie, M; Chee, S; Alzetani, A; Scarlett, L; Richards, J; Ingram, P; Austin, S; Lim, E; De Sousa, P; Jordan, S; Rice, A; Raubenheimer, H; Bhayani, H; Ambrose, L; Devaraj, A; Chavan, H; Begum, S; Buderi, S; Kaniu, D; Malima, M; Booth, S; Nicholson, A; Fernandes, N; Shah, P; Proli, C; Hewish, M; Danson, S; Shackcloth, M; Robinson, L; Russell, P; Dick, C; Le Quesne, J; Kirk, A; Asif, M; Bilancia, R; Kostoulas, N; Thomas, M; Jamal-Hanjani, M; Mcgranahan, N; Swanton, C
Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA
2023 Abbosh, C; Frankell, A; Harrison, T; Kisistok, J; Garnett, A; Johnson, L; Veeriah, S; Moreau, M; Chesh, A; Chaunzwa, T; Weiss, J; Schroeder, M; Ward, S; Grigoriadis, K; Shahpurwalla, A; Litchfield, K; Puttick, C; Biswas, D; Karasaki, T; Black, J; Martinez-Ruiz, C; Bakir, M; Pich, O; Watkins, T; Lim, E; Huebner, A; Moore, D; Godin-Heymann, N; L'Hernault, A; Bye, H; Odell, A; Roberts, P; Gomes, F; Patel, A; Manzano, E; Hiley, C; Carey, N; Riley, J; Cook, D; Hodgson, D; Stetson, D; Barrett, J; Kortlever, R; Evan, G; Hackshaw, A; Daber, R; Shaw, J; Aerts, H; Licon, A; Stahl, J; Jamal-Hanjani, M; Lester, J; Bajaj, A; Nakas, A; Sodha-Ramdeen, A; Ang, K; Tufail, M; Chowdhry, M; Scotland, M; Boyles, R; Rathinam, S; Wilson, C; Marrone, D; Dulloo, S; Fennell, D; Matharu, G; Primrose, L; Boleti, E; Cheyne, H; Khalil, M; Richardson, S; Cruickshank, T; Price, G; Kerr, K; Benafif, S; Gilbert, K; Naidu, B; Osman, A; Lacson, C; Langman, G; Shackleford, H; Djearaman, M; Kadiri, S; Middleton, G; Leek, A; Hodgkinson, J; Totten, N; Montero, A; Smith, E; Fontaine, E; Granato, F; Doran, H; Novasio, J; Rammohan, K; Joseph, L; Bishop, P; Shah, R; Moss, S; Joshi, V; Crosbie, P; Brown, K; Carter, M; Chaturvedi, A; Priest, L; Oliveira, P; Lindsay, C; Blackhall, F; Krebs, M; Summers, Y; Clipson, A; Tugwood, J; Kerr, A; Rothwell, D; Kilgour, E; Dive, C; Schwarz, R; Kaufmann, T; Wilson, G; Rosenthal, R; Van Loo, P; Szallasi, Z; Sokac, M; Salgado, R; Diossy, M; Demeulemeester, J; Bunkum, A; Stewart, A; Magness, A; Rowan, A; Karamani, A; Toncheva, A; Chain, B; Campbell, B; Castignani, C; Bailey, C; Weeden, C; Lee, C; Richard, C; Naceur-Lombardelli, C; Pearce, D; Karagianni, D; Levi, D; Hoxha, E; Larose Cadieux, E; Colliver, E; Nye, E; Gronroos, E; Galvez-Cancino, F; Athanasopoulou, F; Gimeno-Valiente, F; Kassiotis, G; Stavrou, G; Mastrokalos, G; Zhai, H; Lowe, H; Matos, I; Goldman, J; Reading, J; Herrero, J; Rane, J; Nicod, J; Lam, J; Hartley, J; Peggs, K; Enfield, K; Selvaraju, K; Thol, K; Ng, K; Chen, K; Dijkstra, K; Thakkar, K; Ensell, L; Shah, M; Vasquez, M; Litovchenko, M; Werner Sunderland, M; Hill, M; Dietzen, M; Leung, M; Escudero, M; Angelova, M; Tanic, M; Sivakumar, M; Kanu, N; Chervova, O; Lucas, O; Al-Sawaf, O; Prymas, P; Hobson, P; Pawlik, P; Stone, R; Bentham, R; Hynds, R; Vendramin, R; Saghafinia, S; Lopez, S; Gamble, S; Ung, S; Quezada, S; Vanloo, S; Zaccaria, S; Hessey, S; Boeing, S; Beck, S; Bola, S; Denner, T; Marafioti, T; Mourikis, T; Spanswick, V; Barbe, V; Lu, W; Hill, W; Liu, W; Wu, Y; Naito, Y; Ramsden, Z; Veiga, C; Royle, G; Collins-Fekete, C; Fraioli, F; Ashford, P; Clark, T; Forster, M; Lee, S; Borg, E; Falzon, M; Papadatos-Pastos, D; Wilson, J; Ahmad, T; Procter, A; Ahmed, A; Taylor, M; Nair, A; Lawrence, D; Patrini, D; Navani, N; Thakrar, R; Janes, S; Martinoni Hoogenboom, E; Monk, F; Holding, J; Choudhary, J; Bhakhri, K; Scarci, M; Hayward, M; Panagiotopoulos, N; Gorman, P; Khiroya, R; Stephens, R; Wong, Y; Bandula, S; Sharp, A; Smith, S; Gower, N; Dhanda, H; Chan, K; Pilotti, C; Leslie, R; Grapa, A; Zhang, H; Abduljabbar, K; Pan, X; Yuan, Y; Chuter, D; Mackenzie, M; Chee, S; Alzetani, A; Cave, J; Scarlett, L; Richards, J; Ingram, P; Austin, S; Lim, E; De Sousa, P; Jordan, S; Rice, A; Raubenheimer, H; Bhayani, H; Ambrose, L; Devaraj, A; Chavan, H; Begum, S; Buderi, S; Kaniu, D; Malima, M; Booth, S; Nicholson, A; Fernandes, N; Shah, P; Proli, C; Hewish, M; Danson, S; Shackcloth, M; Robinson, L; Russell, P; Blyth, K; Dick, C; Le Quesne, J; Kirk, A; Asif, M; Bilancia, R; Kostoulas, N; Thomas, M; Birkbak, N; Mcgranahan, N; Swanton, C
A local human Vδ1 T cell population is associated with survival in nonsmall-cell lung cancer
2022 Wu, Y; Biswas, D; Usaite, I; Angelova, M; Boeing, S; Karasaki, T; Veeriah, S; Czyzewska-Khan, J; Morton, C; Joseph, M; Hessey, S; Reading, J; Georgiou, A; Al-Bakir, M; Birkbak, N; Price, G; Khalil, M; Kerr, K; Richardson, S; Cheyne, H; Cruickshank, T; Wilson, G; Rosenthal, R; Aerts, H; Hewish, M; Anand, G; Khan, S; Lau, K; Sheaff, M; Schmid, P; Lim, L; Conibear, J; Schwarz, R; Kaufmann, T; Huska, M; Shaw, J; Riley, J; Primrose, L; Fennell, D; Hackshaw, A; Ngai, Y; Sharp, A; Pressey, O; Smith, S; Gower, N; Dhanda, H; Chan, K; Chakraborty, S; Litchfield, K; Thakkar, K; Tugwood, J; Clipson, A; Dive, C; Rothwell, D; Kerr, A; Kilgour, E; Morgan, F; Kornaszewska, M; Attanoos, R; Davies, H; Baker, K; Carter, M; Lindsay, C; Gomes, F; Blackhall, F; Priest, L; Krebs, M; Chaturvedi, A; Oliveira, P; Szallasi, Z; Royle, G; Veiga, C; Skrzypski, M; Salgado, R; Diossy, M; Kirk, A; Asif, M; Butler, J; Bilancia, R; Kostoulas, N; Thomas, M; Mackenzie, M; Wilcox, M; Nakas, A; Rathinam, S; Boyles, R; Tufail, M; Bajaj, A; Ang, K; Chowdhry, M; Shackcloth, M; Asante-Siaw, J; Leek, A; Totten, N; Hodgkinson, J; Van Loo, P; Monteiro, W; Marshal, H; Blyth, K; Dick, C; Fekete, C; Lim, E; De Sousa, P; Jordan, S; Rice, A; Raubenheimer, H; Bhayani, H; Hamilton, M; Ambrose, L; Devaraj, A; Chavan, H; Begum, S; Buderi, S; Kaniu, D; Malima, M; Booth, S; Nicholson, A; Fernandes, N; Shah, P; Proli, C; Gosney, J; Danson, S; Bury, J; Edwards, J; Hill, J; Matthews, S; Kitsanta, Y; Rao, J; Tenconi, S; Socci, L; Suvarna, K; Kibutu, F; Fisher, P; Young, R; Barker, J; Taylor, F; Lloyd, K; Lester, J; Escudero, M; Stewart, A; Rowan, A; Goldman, J; Stone, R; Denner, T; Nye, E; Greco, M; Nicod, J; Puttick, C; Enfield, K; Colliver, E; Magness, A; Bailey, C; Dijkstra, K; Barbe, V; Vendramin, R; Kisistok, J; Sokac, M; Demeulemeester, J; Cadieux, E; Castignani, C; Fu, H; Grigoriadis, K; Lee, C; Athanasopoulou, F; Hiley, C; Robinson, L; Horey, T; Russell, P; Papadatos-Pastos, D; Lock, S; Gilbert, K; Selvaraju, K; Ashford, P; Pich, O; Watkins, T; Ward, S; Lim, E; Frankell, A; Abbosh, C; Hynds, R; Sunderland, M; Peggs, K; Marafioti, T; Hartley, J; Lowe, H; Ensell, L; Spanswick, V; Karamani, A; Moore, D; Beck, S; Chervova, O; Tanic, M; Huebner, A; Dietzen, M; Black, J; Ruiz, C; Bentham, R; Naceur-Lombardelli, C; Zhai, H; Kanu, N; Gimeno-Valiente, F; Bola, S; Matos, I; Shah, M; Cancino, F; Karagianni, D; Razaq, M; Akther, M; Johnson, D; Laycock, J; Hoxha, E; Chain, B; Pearce, D; Chen, K; Herrero, J; Monk, F; Zaccaria, S; Magno, N; Prymas, P; Toncheva, A; Sivakumar, M; Lucas, O; Hill, M; Al-Sawaf, O; Ung, S; Gamble, S; Wong, S; Lawrence, D; Hayward, M; Panagiotopoulos, N; George, R; Patrini, D; Falzon, M; Borg, E; Khiroya, R; Ahmed, A; Taylor, M; Choudhary, J; Janes, S; Forster, M; Ahmad, T; Lee, S; Navani, N; Scarci, M; Gorman, P; Bertoja, E; Stephens, R; Hoogenboom, E; Holding, J; Bandula, S; Thakrar, R; Wilson, J; Shah, M; Marcos, ; Duran, V; Litovchenko, M; Vanloo, S; Pawlik, P; Thol, K; Naidu, B; Langman, G; Bancroft, H; Kadiri, S; Middleton, G; Djearaman, M; Osman, A; Shackleford, H; Patel, A; Ottensmeier, C; Chee, S; Alzetani, A; Cave, J; Scarlett, L; Richards, J; Ingram, P; Shaw, E; Le Quesne, J; Dawson, A; Marrone, D; Dulloo, S; Wilson, C; Summers, Y; Califano, R; Shah, R; Krysiak, P; Rammohan, K; Fontaine, E; Booton, R; Evison, M; Moss, S; Novasio, J; Joseph, L; Bishop, P; Doran, H; Granato, F; Joshi, V; Smith, E; Montero, A; Crosbie, P; Mcgranahan, N; Jamal-Hanjani, M; Hackshaw, A; Quezada, S; Hayday, A; Swanton, C
CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data
2022 Lalani, Z; Chu, G; Hsu, S; Kagawa, S; Xiang, M; Zaccaria, S; El-Kebir, M