Bicocca Open Archive

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GRAUDENZI, ALEX
 Distribuzione geografica
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Continente #
NA - Nord America 11.945
EU - Europa 6.801
AS - Asia 2.264
SA - Sud America 197
AF - Africa 24
Continente sconosciuto - Info sul continente non disponibili 7
OC - Oceania 6
Totale 21.244
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Nazione #
US - Stati Uniti d'America 11.795
DE - Germania 2.250
IT - Italia 1.844
SG - Singapore 891
CN - Cina 677
RU - Federazione Russa 667
IE - Irlanda 580
SE - Svezia 547
HK - Hong Kong 253
UA - Ucraina 228
VN - Vietnam 181
BR - Brasile 179
GB - Regno Unito 150
CA - Canada 144
DK - Danimarca 126
FI - Finlandia 82
FR - Francia 69
ID - Indonesia 68
NL - Olanda 64
CH - Svizzera 60
IN - India 57
TR - Turchia 43
AT - Austria 39
BE - Belgio 32
IR - Iran 20
PK - Pakistan 15
JP - Giappone 13
PL - Polonia 11
ZA - Sudafrica 11
ES - Italia 10
CZ - Repubblica Ceca 7
BG - Bulgaria 5
CL - Cile 5
EC - Ecuador 5
EU - Europa 5
HU - Ungheria 5
IL - Israele 5
IQ - Iraq 5
KR - Corea 5
PH - Filippine 5
AU - Australia 4
BD - Bangladesh 4
GR - Grecia 4
MA - Marocco 4
MX - Messico 4
AR - Argentina 3
LU - Lussemburgo 3
NO - Norvegia 3
NP - Nepal 3
TH - Thailandia 3
UZ - Uzbekistan 3
CI - Costa d'Avorio 2
DO - Repubblica Dominicana 2
LV - Lettonia 2
MK - Macedonia 2
NZ - Nuova Zelanda 2
PE - Perù 2
RO - Romania 2
SC - Seychelles 2
A1 - Anonimo 1
A2 - ???statistics.table.value.countryCode.A2??? 1
AE - Emirati Arabi Uniti 1
AM - Armenia 1
BA - Bosnia-Erzegovina 1
BN - Brunei Darussalam 1
BO - Bolivia 1
CO - Colombia 1
CY - Cipro 1
DZ - Algeria 1
EE - Estonia 1
EG - Egitto 1
GN - Guinea 1
IS - Islanda 1
JO - Giordania 1
KW - Kuwait 1
KZ - Kazakistan 1
LA - Repubblica Popolare Democratica del Laos 1
LI - Liechtenstein 1
LK - Sri Lanka 1
LT - Lituania 1
MD - Moldavia 1
MN - Mongolia 1
OM - Oman 1
PT - Portogallo 1
SA - Arabia Saudita 1
SI - Slovenia 1
SK - Slovacchia (Repubblica Slovacca) 1
SN - Senegal 1
TN - Tunisia 1
TW - Taiwan 1
VE - Venezuela 1
Totale 21.244
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Città #
Ann Arbor 5.712
Frankfurt am Main 2.050
Fairfield 672
Milan 618
Chandler 576
Dublin 569
Woodbridge 549
Singapore 545
Wilmington 536
Ashburn 513
Houston 336
Seattle 274
Hong Kong 247
New York 218
Cambridge 212
Dearborn 203
Jacksonville 200
Princeton 161
Santa Clara 151
Dong Ket 128
Boardman 122
Nanjing 119
Assago 113
Shanghai 113
Toronto 75
Jakarta 68
Lawrence 64
Beijing 63
San Diego 57
Council Bluffs 51
Guangzhou 51
Nuremberg 46
Altamura 41
Sacramento 40
Romola 37
Moscow 36
Rome 36
Lachine 35
Nanchang 35
Andover 34
Monza 33
Turin 30
Brussels 27
Helsinki 27
Jinan 27
Tianjin 26
Ottawa 23
Sesto San Giovanni 23
Zhengzhou 23
Shenyang 22
The Dalles 22
Fremont 21
Hebei 20
Los Angeles 19
Munich 16
Dallas 15
Hangzhou 15
Ningbo 15
Vienna 15
Düsseldorf 14
Falls Church 14
Florence 14
Lappeenranta 14
Leiden 14
Melzo 14
São Paulo 14
Bologna 13
Changsha 13
Washington 13
Ardea 12
Lugano 12
Cernobbio 11
Taizhou 11
Jiaxing 10
Kunming 10
London 10
Staten Island 10
Chicago 9
Genoa 9
Lissone 9
Mugnano Di Napoli 9
Norwalk 9
Parma 9
Amsterdam 8
Como 8
Corbetta 8
Mountain View 8
Naples 8
Napoli 8
Rio de Janeiro 8
Segrate 8
Trieste 8
Triuggio 8
Basel 7
Breganzona 7
Carate Brianza 7
Duncan 7
Phoenix 7
Pregassona 7
Tokyo 7
Totale 16.531
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Nome #
MaREA4Galaxy: metabolic reaction enrichment analysis and visualization of RNA-seq data within Galaxy 557
Synchronization effects in a metabolism-driven model of multi-cellular system 518
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism 501
Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power 494
Longitudinal cancer evolution from single cells 485
FBCA, A multiscale modeling framework combining cellular automata and flux balance analysis 472
Personalized therapy design for liquid tumors via optimal control theory 458
The Influence of Nutrients Diffusion on a Metabolism-driven Model of a Multi-cellular System 458
null 441
Characterization of intra-host SARS-CoV-2 variants improves phylogenomic reconstruction and may reveal functionally convergent mutations 437
A review of computational strategies for denoising and imputation of single-cell transcriptomic data 430
Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data 426
CAPRI: Efficient Inference of Cancer Progression Models from Cross-sectional Data 398
Modeling cumulative biological phenomena with Suppes-Bayes causal networks 392
TRONCO: An R package for the inference of cancer progression models from heterogeneous genomic data 391
Integration of single-cell RNA-sequencing data into flux balance cellular automata 390
VERSO: a comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples 381
Design of the TRONCO bioconductor package for TRanslational ONCOlogy 366
Investigating the Compositional Structure Of Deep Neural Networks 363
Efficient computational strategies to learn the structure of probabilistic graphical models of cumulative phenomena 354
Algorithmic methods to infer the evolutionary trajectories in cancer progression 352
SpidermiR: An R/bioconductor package for integrative analysis with miRNA data 352
Structural Learning of Probabilistic Graphical Models of Cumulative Phenomena 343
VERSO: a comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples 333
A closed-loop optimization framework for personalized cancer therapy design 332
cyTRON and cyTRON/JS: two Cytoscape-based applications for the inference of cancer evolution models 331
An Optimal Control Framework for the Automated Design of Personalized Cancer Treatments 331
CABeRNET: A Cytoscape app for augmented Boolean models of gene regulatory NETworks 329
Understanding deep learning with activation pattern diagrams 318
Pathway-based classification of breast cancer subtypes 313
Cognac: A chaste plugin for the multiscale simulation of gene regulatory networks driving the spatial dynamics of tissues and cancer 302
A Computational Framework To Infer The Order Of Accumulating Mutations In Individual Tumors 298
On the use of topological features of metabolic networks for the classification of cancer samples 295
Ordering cancer mutational profiles of cross-sectional copy number alterations 291
LACE: Inference of cancer evolution models from longitudinal single-cell sequencing data 267
A computational framework to infer the order of accumulating mutations in individual tumors 259
Variant calling from scRNA-seq data allows the assessment of cellular identity in patient-derived cell lines 252
VirMutSig: Discovery and assignment of viral mutational signatures from sequencing data 250
Modeling Spatio-Temporal Dynamics of Metabolic Networks with Cellular Automata and Constraint-Based Methods 247
Combining multi-target regression deep neural networks and kinetic modeling to predict relative fluxes in reaction systems 240
Inferring Tree Causal Models of Cancer Progression with Probability Raising 220
Large-Scale Analysis of SARS-CoV-2 Synonymous Mutations Reveals the Adaptation to the Human Codon Usage During the Virus Evolution 218
PMCE: efficient inference of expressive models of cancer evolution with high prognostic power 217
GeStoDifferent: A Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process 204
Analysis of the spatial and dynamical properties of a multiscale model of intestinal crypts 201
Distributed delays in a hybrid model of tumor-Immune system interplay 201
OG-SPACE: Optimized Stochastic Simulation of Spatial Models of Cancer Evolution 197
Recent developments in research on catalytic reaction networks 192
A model of protocell based on the introduction of a semi-permeable membrane in a stochastic model of catalytic reaction networks 192
Investigating the Role of Network Topology and Dynamical Regimes on the Dynamics of a Cell Differentiation Model 187
Mutational signatures and heterogeneous host response revealed via large-scale characterization of SARS-CoV-2 genomic diversity 177
On RAF Sets and Autocatalytic Cycles in Random Reaction Networks 169
Investigating the relation between stochastic differentiation and homeostasis in intestinal crypts via multiscale modeling 161
Chemotherapy after PD-1 inhibitors in relapsed/refractory Hodgkin lymphoma: Outcomes and clonal evolution dynamics 161
Ordering copy number alteration data to analyze colorectal cancer progression 155
Effects of delayed immune-response in tumor immune-system interplay 154
Dynamical properties of a Boolean model of gene regulatory network with memory 153
J-SPACE: a Julia package for the simulation of spatial models of cancer evolution and of sequencing experiments 152
Preface - Proc. Wivace 2013 - Italian Workshop on Artificial Life and Evolutionary Computation 151
A stochastic model of the emergence of autocatalytic cycles 144
LACE 2.0: an interactive R tool for the inference and visualization of longitudinal cancer evolution 143
Parameter sensitivity analysis of stochastic models: Application to catalytic reaction networks 143
How critical random boolean networks may be affected by the interaction with others 142
Growth and division in a dynamic protocell model 140
Inferring causal models of cancer progression with a shrinkage estimator and probability raising 138
A stochastic model of autocatalytic reaction networks 137
Natural Computing: Preface 137
Unity is strength: Improving the detection of adversarial examples with ensemble approaches 136
The diffusion of perturbations in a model of coupled random boolean networks 134
A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development 129
A multiscale model of intestinal crypts dynamics 127
The role of backward reactions in a stochastic model of catalytic reaction networks 127
Early detection and improved genomic surveillance of SARS-CoV-2 variants from deep sequencing data 123
The detection of dynamical organization in cancer evolution models 119
A stochastic model of catalytic reaction networks in protocells 117
Evolutionary signatures of human cancers revealed via genomic analysis of over 35,000 patients 116
The simulation of gene knock-out in scale-free random boolean models of genetic networks 116
Characterization of SARS-CoV-2 Mutational Signatures from 1.5+ Million Raw Sequencing Samples 115
SparseSignatures: An R package using LASSO-regularized non-negative matrix factorization to identify mutational signatures from human tumor samples 114
Robustness analysis of a boolean model of gene regulatory network with memory 113
The influence of different kinetic rates on the dynamics of a simple model of catalytic reaction network 112
Investigating Cell Criticality 110
Why a simple model of genetic regulatory networks describes the distribution of avalanches in gene expression data 108
Characterization of cancer subtypes associated with clinical outcomes by multi-omics integrative clustering 101
The influence of the residence time on the dynamics of catalytic reaction networks of molecules 101
Methods, computer-accessible medium and systems to model disease progression using biomedical data from multiple patients 99
The role of energy in a stochastic model of the emergence of autocatalytic sets 98
Early tolerance and late persistence as alternative drug responses in cancer 76
Comunicazione cellulare, livelli e strutture ordinate 74
Exploring the Solution Space of Cancer Evolution Inference Frameworks for Single-Cell Sequencing Data 71
A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing 70
MaREA: Metabolic feature extraction, enrichment and visualization of RNAseq data 45
The immune cell dynamics in the peripheral blood of cHL patients receiving anti-PD1 treatment 30
Two-Level Detection of Dynamic Organization in Cancer Evolution Models 17
Totale 22.031
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Categoria #
all - tutte 70.226
article - articoli 0
book - libri 0
conference - conferenze 0
curatela - curatele 0
other - altro 0
patent - brevetti 0
selected - selezionate 0
volume - volumi 0
Totale 70.226
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Totale Lug Ago Sett Ott Nov Dic Gen Feb Mar Apr Mag Giu
2019/2020437 0 0 0 0 0 0 0 0 0 193 158 86
2020/20213.338 72 135 216 256 218 239 240 282 402 406 373 499
2021/20224.678 404 360 394 348 296 406 502 429 328 322 444 445
2022/20234.001 685 984 559 559 320 314 67 145 183 82 69 34
2023/20242.107 73 113 175 75 206 514 446 92 105 44 48 216
2024/20253.266 189 320 391 246 288 169 255 318 459 631 0 0
Totale 22.031