DAMIANI, CHIARA
DAMIANI, CHIARA
DIPARTIMENTO DI BIOTECNOLOGIE E BIOSCIENZE
Adjusting for false discoveries in constraint-based differential metabolic flux analysis
2024 Galuzzi, B; Milazzo, L; Damiani, C
Integrated visualization of metabolomics and transcriptomics with Galaxy
2024 Ferrari, M; Lapi, F; Penati, L; Vanoni, M; Galuzzi, B; Damiani, C
Perspectives on computational modeling of biological systems and the significance of the SysMod community
2024 Puniya, B; Verma, M; Damiani, C; Bakr, S; Drager, A
scFBApy: A Python Framework for Super-Network Flux Balance Analysis
2024 Galuzzi, B; Damiani, C
An Efficient Implementation of Flux Variability Analysis for Metabolic Networks
2023 Galuzzi, B; Damiani, C
Best Practices in Flux Sampling of Constrained-Based Models
2023 Galuzzi, B; Milazzo, L; Damiani, C
Coupling constrained-based flux sampling and clustering to tackle cancer metabolic heterogeneity
2023 Galuzzi, B; Izzo, S; Giampaolo, F; Cuomo, S; Vanoni, M; Alberghina, L; Damiani, C; Piccialli, F
LACE 2.0: an interactive R tool for the inference and visualization of longitudinal cancer evolution
2023 Ascolani, G; Angaroni, F; Maspero, D; Craighero, F; Bhavesh, N; Piazza, R; Damiani, C; Ramazzotti, D; Antoniotti, M; Graudenzi, A
Tumor heterogeneity: preclinical models, emerging technologies, and future applications
2023 Proietto, M; Crippa, M; Damiani, C; Pasquale, V; Sacco, E; Vanoni, M; Gilardi, M
Unity is strength: Improving the detection of adversarial examples with ensemble approaches
2023 Craighero, F; Angaroni, F; Stella, F; Damiani, C; Antoniotti, M; Graudenzi, A
Combining denoising of RNA-seq data and flux balance analysis for cluster analysis of single cells
2022 Galuzzi, B; Vanoni, M; Damiani, C
INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation
2022 Di Filippo, M; Pescini, D; Galuzzi, B; Bonanomi, M; Gaglio, D; Mangano, E; Consolandi, C; Alberghina, L; Vanoni, M; Damiani, C
Machine Learning for Efficient Prediction of Protein Redox Potential: The Flavoproteins Case
2022 Galuzzi, B; Mirarchi, A; Viganò, E; De Gioia, L; Damiani, C; Arrigoni, F
PMCE: efficient inference of expressive models of cancer evolution with high prognostic power
2022 Angaroni, F; Chen, K; Damiani, C; Caravagna, G; Graudenzi, A; Ramazzotti, D
Accelerated global sensitivity analysis of genome-wide constraint-based metabolic models
2021 Nobile, M; Coelho, V; Pescini, D; Damiani, C
Combining multi-target regression deep neural networks and kinetic modeling to predict relative fluxes in reaction systems
2021 Patruno, L; Craighero, F; Maspero, D; Graudenzi, A; Damiani, C
GPRuler: Metabolic gene-protein-reaction rules automatic reconstruction
2021 Di Filippo, M; Damiani, C; Pescini, D
On the use of topological features of metabolic networks for the classification of cancer samples
2021 Machicao, J; Craighero, F; Maspero, D; Angaroni, F; Damiani, C; Graudenzi, A; Antoniotti, M; Bruno, O
Optimal Control of a Discrete Time Stochastic Model of an Epidemic Spreading in Arbitrary Networks
2021 Angaroni, F; Damiani, C; Ramunni, G; Antoniotti, M
FBCA, A multiscale modeling framework combining cellular automata and flux balance analysis
2020 Graudenzi, A; Maspero, D; Damiani, C