We present a new coarse-grained (CG) model of cholesterol (CHOL) for the electrostatic-based ELBA force field. A distinguishing feature of our CHOL model is that the electrostatics is modeled by an explicit point dipole which interacts through an ideal vacuum permittivity. The CHOL model parameters were optimized in a systematic fashion, reproducing the electrostatic and nonpolar partitioning free energies of CHOL in lipid/water mixtures predicted by full-detailed atomistic molecular dynamics simulations. The CHOL model has been validated by comparison to structural, dynamic and thermodynamic properties with experimental and atomistic simulation reference data. The simulation of binary DPPC/cholesterol mixtures covering the relevant biological content of CHOL in mammalian membranes is shown to correctly predict the main lipid behavior as observed experimentally.

Siani, P., Khandelia, H., Orsi, M., Dias, L. (2018). Parameterization of a coarse-grained model of cholesterol with point-dipole electrostatics. JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 32(11), 1259-1271 [10.1007/s10822-018-0164-4].

Parameterization of a coarse-grained model of cholesterol with point-dipole electrostatics

Siani, P.
Primo
;
2018

Abstract

We present a new coarse-grained (CG) model of cholesterol (CHOL) for the electrostatic-based ELBA force field. A distinguishing feature of our CHOL model is that the electrostatics is modeled by an explicit point dipole which interacts through an ideal vacuum permittivity. The CHOL model parameters were optimized in a systematic fashion, reproducing the electrostatic and nonpolar partitioning free energies of CHOL in lipid/water mixtures predicted by full-detailed atomistic molecular dynamics simulations. The CHOL model has been validated by comparison to structural, dynamic and thermodynamic properties with experimental and atomistic simulation reference data. The simulation of binary DPPC/cholesterol mixtures covering the relevant biological content of CHOL in mammalian membranes is shown to correctly predict the main lipid behavior as observed experimentally.
Articolo in rivista - Articolo scientifico
Cholesterol; Coarse-grained; Diffusion; DPPC; Lipid bilayers; Molecular dynamics;
English
2018
32
11
1259
1271
reserved
Siani, P., Khandelia, H., Orsi, M., Dias, L. (2018). Parameterization of a coarse-grained model of cholesterol with point-dipole electrostatics. JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 32(11), 1259-1271 [10.1007/s10822-018-0164-4].
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Utilizza questo identificativo per citare o creare un link a questo documento: https://hdl.handle.net/10281/542401
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